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TAL1 (T-cell acute leukemia 1)

Identity

Other namesSCL (stem cell leukaemia), TCL5 (T cell leukaemia 5)
HGNC TAL1
Location 1p32
Location_base_pair Starts at 47454551 and ends at 47468030 bp from pter ( according to hg18-Mar_2006).

DNA/RNA

 
  DNA diagram
Description 8 exons; 16 kb; SIL (a different gene) sits 90 kb further in 5'
Transcription (complex) alternate splicing of: 1A with 2A, or 3 vs 1B, 2B,3 ...or directly 4, 5, 6

Protein

Description 331 amino acids for the major form of 48 KDa; a truncated form of 26 KDa only in some T-ALL; domains: prolin rich in N-trem; poly Gly; basic Helix-Loop-Helix from the exon 6.
Expression in hematopoietic stem cells, erythroid and megakaryocytic lineages of the adult and in the embryonic brain; indispensable for the genesis of the hematopoietic system.
Function transcription factor; exhibits sequence-specific DNA binding activity when in dimers with another bHLH protein such as E2A (DNA specific sequences are: CANNTG, especially: CAGATG); direct interactions of the bHLH with the LIM domain of RBTN2 or RBTN1.
Homology TAL2 in 9q32; LYL1 in 19p13; more distantly: MYC and other members of the MYC family of Helix-Loop-Helix transcription factors.

Implicated in

Entity t(1;7)(p32;q34) or t(1;14)(p32;q11)/T-ALL --> TAL1-TCRB or TAL1-TCRD
Disease T-cell ALL
Prognosis is not too poor, compared to other T-ALL
  
Entity T-ALL with normal karyotype, but with submicroscopic deletions of part of TAL1 in the 5' region --> SIL-TAL1.
Disease found in 10 to 30 % of T-ALL with a normal karyotype
Hybrid/Mutated Gene deletions which place SIL (SCL interrupting sequence) in close 5' of TAL1; hybrid gene with exon 1 from SIL.
Abnormal Protein TAL1 is under the promoter sequences controle of SIL, a gene active during T cell development.
  
Entity t(1;3)(p32;p21)/T-ALL --> TAL1-TCTA
Disease T-cell ALL
  

Breakpoints

 
Note mainly in 5' in a 1 kb region; but also dispersed in rare cases

External links

Nomenclature
HGNCTAL1   11556
Entrez_GeneTAL1  6886  T-cell acute lymphocytic leukemia 1
Cards
AtlasTAL1
GeneCardsTAL1
EnsemblTAL1 [Search_View]   ENSG00000162367 [Gene_View]  TAL1 [Vega]
GenatlasTAL1
GeneLynxTAL1
eGenomeTAL1
euGene6886
Genomic and cartography
GoldenPathTAL1  -  1p32   chr1:47454551-47468030 -  1p32   [Description]    (hg18-Mar_2006)
EnsemblTAL1 - 1p32 [CytoView]
NCBIMapview
OMIMDisease map [OMIM]
HomoloGeneTAL1
Gene and transcription
GenbankBC160033 [ ENTREZ ]
GenbankCR624822 [ ENTREZ ]
GenbankM29038 [ ENTREZ ]
GenbankM61108 [ ENTREZ ]
GenbankS53245 [ ENTREZ ]
RefSeqNM_003189 [ SRS ]    NM_003189 [ ENTREZ ]
RefSeqAC_000044 [ SRS ]    AC_000044 [ ENTREZ ]
RefSeqAC_000133 [ SRS ]    AC_000133 [ ENTREZ ]
RefSeqNC_000001 [ SRS ]    NC_000001 [ ENTREZ ]
RefSeqNT_032977 [ SRS ]    NT_032977 [ ENTREZ ]
RefSeqNW_001838578 [ SRS ]    NW_001838578 [ ENTREZ ]
RefSeqNW_921351 [ SRS ]    NW_921351 [ ENTREZ ]
CCDSTAL1 CCDS - NCBI
AceViewTAL1 AceView - NCBI
UnigeneHs.709194 [ SRS ]    Hs.709194 [ NCBI ]     HS709194 [ spliceNest ]
Fast-db15891 (alternative variants)
Protein : pattern, domain, 3D structure
SwissProtP17542 [ SRS]    P17542 [ EXPASY ]     P17542 [ INTERPRO ]     P17542 [ UNIPROT ] P17542 [ VarSplice ]
PrositePS50888 HLH [ SRS ]    PS50888 HLH [ Expasy ]
InterproIPR001092 HLH_basic [ SRS ]    IPR001092 HLH_basic [ EBI ]
InterproIPR011598 HLH_DNA_bd [ SRS ]    IPR011598 HLH_DNA_bd [ EBI ]
CluSTrP17542
PfamPF00010 HLH [ SRS ]    PF00010 HLH [ Sanger ]    pfam00010 [ NCBI-CDD ]
SmartSM00353 HLH [EMBL]
BlocksP17542
HPRD01753
Protein Interaction databases
DIPP17542
IntActP17542
Polymorphism : SNP, mutations, diseases
OMIM187040    [ map ]   
GENECLINICS187040
SNPTAL1 [dbSNP-NCBI]  
SNPNM_003189 [SNP-NCI]  
SNPTAL1 [GeneSNPs - Utah]  TAL1] [HGBASE - SRS]
HAPMAPTAL1 [HAPMAP]  
COSMICTAL1 [Somatic mutation (COSMIC-CGP-Sanger)]  
TICdbTAL1 [Translocation breakpoints In Cancer]  
HGMDTAL1
Genetic AssociationTAL1
CDC HuGETAL1
General knowledge
Family BrowserTAL1 [UCSC Family Browser]
SOURCENM_003189
SMDHs.709194
SAGEHs.709194
GODNA binding [Amigo]  DNA binding
GOprotein binding [Amigo]  protein binding
GOnucleus [Amigo]  nucleus
GOnucleus [Amigo]  nucleus
GOregulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GOmulticellular organismal development [Amigo]  multicellular organismal development
GOcell proliferation [Amigo]  cell proliferation
GOhemopoiesis [Amigo]  hemopoiesis
GOerythrocyte differentiation [Amigo]  erythrocyte differentiation
GOtranscription regulator activity [Amigo]  transcription regulator activity
GOprotein complex [Amigo]  protein complex
GOcell fate commitment [Amigo]  cell fate commitment
GOregulation of transcription [Amigo]  regulation of transcription
PubGeneTAL1
TreeFamTAL1
CTD6886 [Comparative ToxicoGenomics Database]
Other databases
Probes
ProbeTAL1 Related clones (RZPD - Berlin)
PubMed
PubMed57 Pubmed reference(s) in Entrez

Bibliography

Transcriptional activity of TAL1 in T cell acute lymphoblastic leukemia (T-ALL) requires RBTN1 or -2 and induces TALLA1, a highly specific tumor marker of T-ALL.
Ono Y, Fukuhara N, Yoshie O
The Journal of biological chemistry. 1997 ; 272 (7) : 4576-4581.
PMID 9020185
 
The TAL1/Scl basic helix-loop-helix protein blocks myogenic differentiation and E-box dependent transactivation.
Hofmann TJ, Cole MD
Oncogene. 1996 ; 13 (3) : 617-624.
PMID 8760303
 
The T cell leukemia oncoprotein SCL/tal-1 is essential for development of all hematopoietic lineages.
Porcher C, Swat W, Rockwell K, Fujiwara Y, Alt FW, Orkin SH
Cell. 1996 ; 86 (1) : 47-57.
PMID 8689686
 
Association of erythroid transcription factors: complexes involving the LIM protein RBTN2 and the zinc-finger protein GATA1.
Osada H, Grutz G, Axelson H, Forster A, Rabbitts TH
Proceedings of the National Academy of Sciences of the United States of America. 1995 ; 92 (21) : 9585-9589.
PMID 7568177
 
Specific in vivo association between the bHLH and LIM proteins implicated in human T cell leukemia.
Wadman I, Li J, Bash RO, Forster A, Osada H, Rabbitts TH, Baer R
The EMBO journal. 1994 ; 13 (20) : 4831-4839.
PMID 7957052
 
Clinical features and outcome of T-cell acute lymphoblastic leukemia in childhood with respect to alterations at the TAL1 locus: a Pediatric Oncology Group study.
Bash RO, Crist WM, Shuster JJ, Link MP, Amylon M, Pullen J, Carroll AJ, Buchanan GR, Smith RG, Baer R
Blood. 1993 ; 81 (8) : 2110-2117.
PMID 8471769
 
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written08-1997Jean-Loup Huret and Marie-Claude Labastie
-
Updated03-1998Jean-Loup Huret and Marie-Claude Labastie
Institut d'Embryologie Cellulaire et Moléculaire, CNRS FRE 216O, 94736, Nogent-sur-Marne Cedex, France

Citation

This paper should be referenced as such :
- . TAL1 (T-cell acute leukemia 1). Atlas Genet Cytogenet Oncol Haematol. August 1997 .
URL : http://AtlasGeneticsOncology.org/Genes/TAL1.html
Huret JL and Labastie MC . TAL1 (T-cell acute leukemia 1). Atlas Genet Cytogenet Oncol Haematol. March 1998 .
URL : http://AtlasGeneticsOncology.org/Genes/TAL1.html
Huret JL and Labastie MC . TAL1 (T-cell acute leukemia 1). Atlas Genet Cytogenet Oncol Haematol. .
URL : http://AtlasGeneticsOncology.org/Genes/TAL1.html

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sun Nov 9 19:48:17 2008


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